Publications

2023

• E. Alamoudi, Y. Schälte, R. Müller, J. Starruß, N. Bundgaard, F. Graw, L. Brusch, J. Hasenauer
  FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes
  Bioinformatics, 39(11), btad674, 2023 [DOI]
  
  
• B. Raach, N. Bundgaard, M. J. Haase, J. Starruß, R. Sotillo, M. L. Stanifer, F. Graw
  Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium
  PLoS Comput Biol 19(8), e1011356, 2023 [DOI]
  
  
• R. Müller, A. Boutillon, D. Jahn, J. Starruß, N.B. David, L. Brusch
  Collective cell migration due to guidance-by-followers is robust to multiple stimuli
  Frontiers in Applied Mathematics and Statistics 9, 1163583, 2023 [DOI]
  
  

2022

• A. Boutillon, S. Escot, A. Elouin, D. Jahn, S. Gonzalez-Tirado, J. Starruß, L. Brusch, N.B. David
  Guidance by followers ensures long-range coordination of cell migration through α-Catenin mechanoperception
  Developmental Cell , in press, 2022 [DOI]
  
  
• B. Shaikh et al.
  BioSimulators: a central registry of simulation engines and services for recommending specific tools
  Nucleic Acids Research , gkac331, 2022 [DOI]
  
  
• E. Alamoudi, J. Starruß, N. Bundgaard, R. Müller, F. Reck, F. Graw, L. Brusch, J. Hasenauer, Y. Schälte
  Massively Parallel Likelihood-Free Parameter Inference for Biological Multi-Scale Systems
  NIC Symposium 2022, M. Müller, Ch. Peter, A. Trautmann (Eds.) NIC Series, Vol. 51, 355-365, 2022 [URL]
  
  

2020

• O. Ilina, P.G. Gritsenko, S. Syga, J. Lippoldt, C.A.M. La Porta, O. Chepizhko, S. Grosser, M. Vullings, G.-J. Bakker, J. Starruß, P. Bult, S. Zapperi, J.A. Käs, A. Deutsch, P. Friedl
  Cell–cell adhesion and 3D matrix confinement determine jamming transitions in breast cancer invasion
  Nature Cell Biology 2020 [DOI]
  
  

2014

• J. Starruß, W. de Back, L. Brusch, A. Deutsch
  Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology
  Bioinformatics, 30, 9, 1331-1332, 2014 [DOI]
  
  

2012

• F. Peruani, J. Starruss, V. Jakovljevic, L. Sogaard-Andersen, A. Deutsch, M. Bär
  Collective motion and nonequilibrium cluster formation in colonies of gliding bacteria
  Phys. Rev. Lett., 108, 9, 098102, 2012 [DOI]
  
  

2011

• A. Köhn-Luque, W. de Back, J. Starruß, A. Mattioti, A. Deutsch, J-M. Pérez-Pomares, M.A. Herrero
  Early embryonic vascular patterning by matrix-mediated paracrine signalling: a mathematical model study
  PLoS One, 6, 9, e24175, 2011 [DOI]
  
  

2007

• J. Starruß, F. Peruani, M. Bär, A. Deutsch
  Bacterial swarming driven by rod shape
  In: Mathematical Modeling of Biological Systems, Volume I: Cellular Biophysics, Regulatory Networks, Development, Biomedicine, and Data Analysis
  Birkhauser, 2008 [DOI]
  
  
• J. Starruß, T. Bley, L. Søgaard-Andersen, A. Deutsch
  A new mechanism for collective migration in M. xanthus
  J. Stat. Phys., 128, 269-286, 2007 [DOI]
  
  

2006

• T. Pompe, J. Starruß, M. Bobeth, W. Pompe
  Modeling of pattern development during fibronectin nanofibril formation
  Biointerphases, 1, 93-97, 2006
  
  

2005

• M. Fritsch, J. Starruß, A. Lösche, S. Müller, T. Bley
  Cell cycle synchronization of Cupriavidus necator by continuous phasing measured via flow cytometry
  Biotechnol. Bioeng., 92, 635-642, 2005