documentation:work_flow_tools
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| documentation:work_flow_tools [23:42 04.07.2013] – [Simulation and execution] Walter | documentation:work_flow_tools [18:34 18.08.2021] (current) – Uncollapse Diego Jahn | ||
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| === Model development and testing === | === Model development and testing === | ||
| - | ++++ Copy / paste between models | + | == Copy / paste between models |
| Multiscale modeling often involves the **integration of existing models**. For example, combining an existing cell-based CPM model (CPM.xml) with an ODE model (ODE.xml) regulating, say, the cell cycle of each cell. | Multiscale modeling often involves the **integration of existing models**. For example, combining an existing cell-based CPM model (CPM.xml) with an ODE model (ODE.xml) regulating, say, the cell cycle of each cell. | ||
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| All copied elements are shown in the '' | All copied elements are shown in the '' | ||
| - | ++++ | + | == Disable / enable |
| - | + | ||
| - | + | ||
| - | ++++ Disable / enable | + | |
| Testing models frequently involves **switch things on and off** to observe their effects. Morpheus allow you to do this without losing your contents by using Right-Click -> '' | Testing models frequently involves **switch things on and off** to observe their effects. Morpheus allow you to do this without losing your contents by using Right-Click -> '' | ||
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| - | ++++ | + | == Interactive and local mode == |
| - | + | ||
| - | ++++ Interactive and local mode | | + | |
| During model construction and testing, graphical output and visual feedback is important to debugging, spot erros and guide development. | During model construction and testing, graphical output and visual feedback is important to debugging, spot erros and guide development. | ||
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| | **Remote** | Remote batch processing | | **Remote** | Remote batch processing | ||
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| === Simulation and initial conditions === | === Simulation and initial conditions === | ||
| - | ++++ Snapshots and initial conditions| | + | == Snapshots and initial conditions |
| Checkpointing is taking snapshots of the state of an application during its execution. In computer science, this is used as a **fault tolerance** mechanism by using these snapshots to restart the application in case of failure. | Checkpointing is taking snapshots of the state of an application during its execution. In computer science, this is used as a **fault tolerance** mechanism by using these snapshots to restart the application in case of failure. | ||
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| Note: If you want to use checkpointing to construct a complex initial condition, you | Note: If you want to use checkpointing to construct a complex initial condition, you | ||
| - | ++++ | + | == Image-based modeling |
| - | + | ||
| - | ++++ Image-based modeling| | + | |
| Often, realistic tissue geometries are an important factor in the study of tissue formation. To configure models with realistic tissue geometries, Morpheus allows you to import (segmented) microscopy data in the form of **multipage TIFF images**. | Often, realistic tissue geometries are an important factor in the study of tissue formation. To configure models with realistic tissue geometries, Morpheus allows you to import (segmented) microscopy data in the form of **multipage TIFF images**. | ||
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| Note that Morpheus is also able to **export TIFF images**, see '' | Note that Morpheus is also able to **export TIFF images**, see '' | ||
| - | ++++ | ||
| === Parameter exploration === | === Parameter exploration === | ||
documentation/work_flow_tools.txt · Last modified: 18:34 18.08.2021 by Diego Jahn