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--- examples:examples [22:17 17.11.2013] – Walter
+++ examples:examples [15:34 17.08.2021] (current) – Diego Jahn
@@ Line 1: / Line 1: @@
 ~~NOTOC~~
 ====== Examples ======
-Click images for details. These models are also included in Morpheus GUI under **''File -> Examples''**.
 ^ [[differential_equations| Ordinary differential equations]]  ^^^^^
-| [[differential_equations#ODE model: Cell cycle|{{:examples:cellcycle_singlecell.png?direct&125|}}]] | [[differential_equations#SBML import: MAPK signaling|{{:examples:MAPK_SBML.png?direct&125|}}]] | [[differential_equations#Delay Differential Equations: Cell cycle|{{:examples:cellcycledelay.png?direct&125|}}]] |  [[differential_equations#Coupled ODE lattice: Lateral signaling|{{:examples:lateral_signaling.png?direct&125x125|}}]] |
+| [[differential_equations#ODE model: Cell cycle|{{:examples:cellcycle_singlecell.png?direct&125|}}]] | [[differential_equations#Delay Differential Equations: Cell cycle|{{:examples:cellcycledelay.png?direct&125|}}]] |
 ^ [[reaction-diffusion|Reaction-diffusion systems]]  ^^^^^
-| [[reaction-diffusion#1D reaction-diffusion: Activator-Inhibitor|{{::examples:1D-PDE.png?direct&125|}}]] | [[reaction-diffusion#2D reaction-diffusion: Activator-Inhibitor|{{:examples:activator_inhibitor.png?direct&125|}}]] | [[reaction-diffusion#Domains: Reaction-diffusion in irregular domains|{{examples:example-domains.png?direct&125|}}]] | [[reaction-diffusion#Spatial parameter sweep: Turing patterns|{{::example-TuringMiyazawa.png?direct&125|}}]] |[[reaction-diffusion#3D reaction-diffusion: Excitable Media|{{::example-barkley_3D.png?direct&125|}}]] |
+| [[reaction-diffusion#1D reaction-diffusion: Activator-Inhibitor|{{::examples:1D-PDE.png?direct&125|}}]] | [[reaction-diffusion#Domains: Reaction-diffusion in irregular domains|{{examples:example-domains.png?direct&125|}}]] |[[reaction-diffusion#3D reaction-diffusion: Excitable Media|{{::example-barkley_3D.png?direct&125|}}]] |
 ^ [[cellular_potts|Cellular Potts models]]  ^^^^^
-| [[cellular_potts#Differential Adhesion: cell sorting in two dimensions|{{::example-cellsorting2D.png?direct&125|}}]] | [[cellular_potts#Proliferation in two dimensions|{{::example_proliferation2d.png?direct&125|}}]] | [[cellular_potts#Persistence|{{:examples:persistence.png?direct&125|}}]] | [[cellular_potts#Proliferation in three dimensions|{{::example-proliferation3d.png?direct&125|}}]] |
+| [[cellular_potts#Proliferation in two dimensions|{{::example_proliferation2d.png?direct&125|}}]] | [[cellular_potts#Persistence|{{:examples:persistence.png?direct&125|}}]] | [[cellular_potts#Run and Tumble|{{:examples:runandtumble.png?direct&125|}}]] |
 ^ [[multiscale|Multi-scale models]]  ^^^^^
 | [[multiscale#Coupling spatial models: Autocrine chemotaxis|{{:example-cpm_pde.png?direct&125|}}]] | [[multiscale#Coupling CPM and PDE: Vascular patterning|{{::example-vascularpatterning.png?direct&125|}}]] | [[multiscale#ODEs in CPM cells: Cell cycle and proliferation|{{:examples:example-cellcycle.png?direct&125|}}]] | [[multiscale#Dictyostelium|{{:examples:example-dicty.png?direct&125|}}]] | [[multiscale#MembraneProperties: Cell polarization and chemotaxis|{{:examples:cellpolarity0060.png?direct&125|}}]] |
 ^ [[miscellaneous|Miscellaneous models]]  ^^^^^
-| [[miscellaneous#Minimal Model|{{::minimal_model.png?direct&125|}}]] | [[miscellaneous#Game of Life: Cellular Automata|{{::example-gameoflife.png?direct&125|}}]] | [[miscellaneous#French Flag: Morphogen gradient|{{::example-frenchflag.png?direct&125|}}]] |
+| [[miscellaneous#Minimal Model|{{::minimal_model.png?direct&125|}}]] | [[miscellaneous#Game of Life: Cellular Automata|{{::example-gameoflife.png?direct&125|}}]] | [[miscellaneous#French Flag: Morphogen gradient|{{::example-frenchflag.png?direct&125|}}]] | [[miscellaneous#Particle Aggregation: FlipCells|{{:examples:particleaggregation.png?direct&125|}}]] |
-These examples aim to
-  * Demonstrate key features of Morpheus
-  * Show the diversity of modeling approaches
-  * Introduce the Morpheus model description language
-  * Provide templates and inspiration for your own models
-=== Publications ===
-For examples of the use of Morpheus in research and education, see the [[documentation:publications|publications]] page.