Internal Impressum Sitemap
TU Dresden
Dept. for Innovative
Methods of Computing


  • A. Scholich, S. Syga, H. Morales-Navarrete, F. Segovia-Miranda, H. Nonaka, K. Meyer, W. de Back, L. Brusch, Y. Kalaidzidis, M. Zerial, F. Jülicher, B. M. Friedrich
    Quantification of Nematic Cell Polarity in Three-dimensional Tissues
    PLOS Comp. Biol. 16 (12), e1008412, 2020 [DOI]

  • T.J. Sego, J.O. Aponte-Serrano, J.F. Gianlupi, S. Heaps, K. Breithaupt, L. Brusch, J.M. Osborne, E.M. Quardokus, R.K. Plemper, J.A. Glazier
    A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.
    PLOS Comp. Biol. 16 (12), e1008451, 2020 [DOI]

  • A. Barua, S. Syga, P. Mascheroni, N. Kavallaris, M. Meyer-Hermann, A. Deutsch, H. Hatzikirou
    Entropy-driven cell decision-making predicts "fluid-to-solid" transition in multicellular systems
    New Journal of Physics in press, 2020 [DOI]

  • O. Ilina, P.G. Gritsenko, S. Syga, J. Lippoldt, C.A.M. La Porta, O. Chepizhko, S. Grosser, M. Vullings, G.-J. Bakker, J. Starruß, P. Bult, S. Zapperi, J.A. Käs, A. Deutsch, P. Friedl
    Cell–cell adhesion and 3D matrix confinement determine jamming transitions in breast cancer invasion
    Nature Cell Biology 22, 1103–1115, 2020 [DOI]

  • A. Deutsch, P. Friedl, L. Preziosi, G. Theraulaz
    Multi-scale analysis and modelling of collective migration in biological systems
    Philosophical Transactions of the Royal Society B: Biological Sciences 375 (1807), 20190377, 2020 [DOI]

  • H. Anzt, F. Bach, S. Druskat, F. Löffler, A. Loewe, B.Y. Renard, G. Seemann, A. Struck, E. Achhammer, P. Aggarwal, F. Appel, M. Bader, L. Brusch, C. Busse, G. Chourdakis, P.W. Dabrowski, P. Ebert, B. Flemisch, S. Friedl, B. Fritzsch, M.D. Funk, V. Gast, F. Goth, J.N. Grad, S. Hermann, F. Hohmann, S. Janosch, D. Kutra, J. Linxweiler, T. Muth, W. Peters-Kottig, F. Rack, F.H.C. Raters, S. Rave, G. Reina, M. Reißig, T. Ropinski, J. Schaarschmidt, H. Seibold, J.P. Thiele, B. Uekerman, S. Unger, R. Weeber
    An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action
    F1000Research 9, 295, 2020 [DOI]

  • S. Aland, F. Stenger, R. Müller, A. Deutsch, A. Voigt
    A phase-field approach to trabecular bone remodeling
    Frontiers in Applied Mathematics and Statistics 6, 12, 2020 [DOI]

  • H. Hatzikirou, G. Breier, A. Deutsch
    Cellular Automaton Modeling of Tumor Invasion
    Encyclopedia of Complexity and Systems Science (Ed. R. A. Meyers, Springer Berlin), 1-13, 2020 [DOI]

  • L. Manuel Muñoz-Nava, H. Ariel Alvarez, M. Flores-Flores, O. Chara, M. Nahmad
    A dynamic cell recruitment process drives growth of the Drosophila wing by overscaling the Vestigial expression pattern
    Developmental Biology 462 (2), 141-151, 2020 [DOI]

  • K. Meyer, H. Morales-Navarrete, S. Seifert, M. Wilsch-Braeuninger, U. Dahmen, E. M. Tanaka, L. Brusch, Y. Kalaidzidis, M. Zerial
    Bile canaliculi remodeling activates YAP via the actin cytoskeleton during liver regeneration
    Molecular Systems Biology 16 (2), e8985, 2020 [DOI]

  • J. M. Nava-Sedeno, A. Voss-Böhme, H. Hatzikirou, A. Deutsch, F. Peruani
    Modeling collective cell motion: are on- and off-lattice models equivalent?
    Philosophical Transactions B 375 (1807), 20190378, 2020 [DOI]

  • M. Seifert, G. Schackert, A. Temme, E. Schröck, A. Deutsch, B. Klink
    Molecular characterization of astrocytoma progression towards secondary glioblastomas utilizing patient-matched tumor pairs
    Cancers 12 (6), 1696, 2020 [DOI]

  • F. Segovia-Miranda, H. Morales-Navarrete, M. Kücken, V. Moser, S. Seifert, U. Repnik, F. Rost, M. Brosch, A. Hendriks, S. Hinz, C. Röcken, D. Lütjohann, Y. Kalaidzidis, C. Schafmayer, L. Brusch, J. Hampe, M. Zerial
    Three-dimensional spatially resolved geometrical and functional models of human liver tissue reveal new aspects of NAFLD progression
    Nature Medicine 25, 1885–1893, 2019 [DOI]

  • E. Kolbe, S. Aleithe, C. Rennert, L. Spormann, F. Ott, D. Meierhofer, R. Gajowski, C. Stöpel, S. Hoehme, M. Kücken, L. Brusch, M. Seifert, W. von Schoenfels, C. Schafmayer, M. Brosch, U. Hofmann, G. Damm, D. Seehofer, J. Hampe, R. Gebhardt, M. Matz-Soja
    Mutual Zonated Interactions of Wnt and Hh Signaling Are Orchestrating the Metabolism of the Adult Liver in Mice and Human
    Cell Reports 29, 4553–4567.e7, 2019 [DOI]

  • H. T. Vu, S. Mansour, M. Kücken, C. Blasse, C. Basquin, J. Azimzadeh, G. Myers, L. Brusch, J. Rink
    Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks, Developmental Cell 51, 526–542.e6, 2019 [DOI]

  • H. Morales-Navarrete, H. Nonaka, A.Scholich, F. Segovia-Miranda, W. de Back, K. Meyer, R. L. Bogorad, V. Koteliansky, L. Brusch, Y. Kalaidzidis,F. Jülicher, B. M. Friedrich M. Zerial
    Liquid-crystal organization of liver tissue, eLife 8, e44860, 2019 [DOI]

  • W. de Back, T. Zerjatke, I. Roeder
    Statistical and mathematical modeling of spatiotemporal dynamics of stem cells
    in Methods in Molecular Biology
    , Klein and Wuchter(Eds.), Springer Protocols, Humana Press 219-243, 2019 [DOI]

  • T. Buder, A. Deutsch, B. Klink, A. Voss-Böhme
    Patterns of tumor progression predict small and tissue-specific tumor-originating niches
    Front. Oncol., 8, 668, 2019 [DOI]

  • A. Dirkse, A. Golebiewska, T. Buder, P. V. Nazarov, A. Muller, S. Poovathingal,N. H. C. Brons, S. Leite, N. Sauvageot, D. Sarkisjan, M. Seyfrid, S. Fritah, D. Stieber, A. Michelucci, F. Hertel, C. Herold-Mende, F. Azuaje, A. Skupin, R. Bjerkvig, A. Deutsch, A. Voss-Böhme, S. P.Niclou
    Stem cell-associated heterogeneity in Glioblastoma results from intrinsic tumor plasticity shaped by the microenvironment
    Nature Communications 10 (1), 1787, 2019 [DOI]

  • R. Müller, A. Henss, M. Kampschulte, M. Rohnke, A. C. Langheinrich, C. Heiss, J. Janek, A. Voigt, HJ. Wilke, A. Ignatius, J. Herfurth, T. El Khassawna, A. Deutsch
    Analysis of microscopic bone properties in an osteoporotic sheep model - A combined biomechanics, FE and ToF-SIMS study
    Journal of the Royal Society Interface 16 (151), 20180793, 2019 [DOI]

  • O. Ostrenko, J. Hampe, L. Brusch
    Wet-tip versus dry-tip regimes of osmotically driven fluid flow
    Scientific Reports, 9, 4528, 2019 [DOI]

  • S. Syga, J. M. Nava-Sedeño, L. Brusch, A. Deutsch
    A Lattice-Gas Cellular Automaton Model for Discrete Excitable Media
    in Spirals and Vortices, Müller and Tsuji(Eds.), Chapter - 15, 253-264, Springer, 2019 [DOI]

  • F. Zakrzewski, W. de Back, M. Weigert, T. Wenke, S. Zeugner, R. Mantey, C. Sperling, K. Friedrich, I. Roeder, D. Aust, G. Baretton, P. Hönscheid
    Automated detection of the HER2 gene amplification status in Fluorescence in situ hybridization images for the diagnostics of cancer tissues
    Scientific Reports, 9, 8231, 2019 [DOI]

  • J. Medelnik, K. Roensch, S. Okawa, A. del Sol, O. Chara, L. Mchedlishvili E. M. Tanaka
    Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells, Stem Cell Reports 10, 1751 - 1765, 2018 [DOI]

  • R. Apweiler, T. Beissbarth, M. Berthold, N. Bluethgen, Y. Burmeister, O. Dammann, A. Deutsch, F. Feuerhake, A. Franke, J. Hasenauer, S. Hoffmann, T. Höfer, P. Jansen, L. Kaderali, U. Klingmüller, I. Koch, O. Kohlbacher, L. Küpfer, F. Lammert, D. Maier, N. Pfeifer, N. Radde, M. Rehm, I. Röder, J. Saez-Rodriguez, U. Sax, B. Schmeck, A. Schuppert, B. Seilheimer, F. Theis, J. Vera-González, O. Wolkenhauer
    Whither Systems Medicine?
    Experimental & Molecular Medicine, 50, e453, 2018 [DOI]

  • O. Chara, A. Borges, P.E. Milhiet, M. Nöllmann, D.I. Cattoni
    Sequence-dependent catalytic regulation of the SpoIIIE motor activity ensures directionality of DNA translocation
    Scientific Reports, 8, 1, 5254, 2018 [DOI]

  • I. Spöring, V. A. Martinez, C. Hotz, J. Schwarz-Linek, K. L. Grady, J. M. Nava-Sedeno, T. Vissers, H. M. Singer, M. Rohde, C. Bourquin, H. Hatzikirou, W. C. K. Poon, Y. S. Dufour, M. Erhardt
    Hook length of the bacterial flagellum is optimized for maximal stability of the flagellar bundle
    PLOS Biology, 16, 9, e2006989, 2018 [DOI]

  • J. C. L. Alfonso, K. Talkenberger, M. Seifert, B. Klink, A. Hawkins-Daarud, H. Hatzikirou, K. R. Swanson, A. Deutsch
    The biology and mathematical modelling of glioma invasion: a review
    Journal of the Royal Society Interface, 14, 136, 20170490, 2017 [DOI]

  • T. Buder, A. Deutsch, M. Seifert, A. Voss-Böhme
    CellTrans: An R package to quantify stochastic cell state transitions
    Bioinformatics and Biology Insights, 11, 1-14, 2017 [DOI]

  • C. N. Hinrichs, M. Ingargiola, T. Käubler, S. Löck, A. Temme, A. Köhn-Luque, A. Deutsch, O. Vovk, O. Stasyk, L. A. Kunz-Schughart
    Arginine Deprivation Therapy: Putative Strategy to Eradicate Glioblastoma Cells by Radiosensitization
    Molecular Cancer Therapeutics, 17 (2), 393-406, 2017 [DOI]

  • K. B. Hoffmann, A. Voss-Böhme, J. C. Rink, L. Brusch
    A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns
    Journal of The Royal Society Interface, 14, 135, 20170466, 2017 [DOI]

  • N. König, C. Fiehn, C. Wolf, M. Schuster, E. Cura Costa, V. Tüngler, HA. Alvarez, O. Chara, K. Engel, R. Goldbach-Mansky, C. Günther, MA. Lee-Kirsch
    Familial chilblain lupus due to a gain-of-function mutation in STING
    Ann Rheum Dis, 76, 468-472, 2017 [DOI]

  • P. K. Maini, H. G. Othmer, A. Deutsch
    Obituary: Hans Meinhardt (1938–2016)
    Bull. Math. Biol., 79, 2, 383-388, 2017 [DOI]

  • K. Meyer, O. Ostrenko, G. Bourantas, H. Morales-Navarrete, N. Porat-Shliom, F. Segovia-Miranda, H. Nonaka, A. Ghaemi, J.-M. Verbavatz, L. Brusch, I. Sbalzarini, Y. Kalaidzidis, R. Weigert, M. Zerial
    A predictive 3D multi-scale model of biliary fluid dynamics in the liver lobule
    Cell Systems, 4, 3, 277–290.e9, 2017 [DOI]

  • J. M. Nava-Sedeño, H. Hatzikirou, R. Klages, A. Deutsch
    Cellular automaton models for time-correlated random walks: derivation and analysis
    Scientific Reports, 7, 1, 16952, 2017 [DOI]

  • J. M. Nava-Sedeno, H. Hatzikirou, F. Peruani, A. Deutsch
    Extracting cellular automaton rules from physical Langevin equation models for single and collective cell migration
    J. Math. Biol., 75, 5, 1075-1100, 2017 [DOI]

  • O. Ostrenko, P. Incardona, R. Ramaswamy, L. Brusch, I. F. Sbalzarini
    pSSAlib: The partial-propensity stochastic chemical network simulator
    PLoS Computational Biology, 13, 12, e1005865, 2017 [DOI]

  • D. Reher, B. Klink, A. Deutsch, A. Voss-Böhme
    Cell adhesion heterogeneity reinforces tumour cell dissemination: novel insights from a mathematical model
    Biology Direct, 12, 1, 18, 2017 [DOI]

  • K. Talkenberger, E. A. Cavalcanti-Adam, A. Voss-Böhme, A. Deutsch
    Amoeboid-mesenchymal migration plasticity promotes invasion only in complex heterogeneous microenvironments
    Scientific Reports, 7, 9237, 2017 [DOI]

  • J. C. L. Alfonso, A. Kohn-Luque, T. Stylianopoulos, F. Feuerhake, A. Deutsch, H. Hatzikirou
    Why one-size-fits-all vaso-modulatory interventions fail to control glioma invasion: in silico insights
    Scientific Reports, 6, 37283, 2016 [DOI]

  • J. C. L. Alfonso, N. S. Schaadt, R. Schönmeyer, N. Brieu, G. Forestier, C. Wemmert, F. Feuerhake, H. Hatzikirou
    In-silico insights on the prognostic potential of immune cell infiltration patterns in the breast lobular epithelium
    Scientific Reports, 6, 33322, 2016 [DOI]

  • J.D. Currie, A. Kawaguchi, R.M. Traspas, M. Schuez, O. Chara, E.M. Tanaka
    Live imaging of axolotl digit regeneration reveals spatiotemporal choreography of diverse connective tissue progenitor pools
    Dev Cell, 39, 4 411-423, 2016 [DOI]

  • MF. Leal Denis, HA. Alvarez, N. Lauri, CL. Alvarez, O. Chara, PJ. Schwarzbaum
    Dynamic Regulation of Cell Volume and Extracellular ATP of Human Erythrocytes
    PLoS ONE, 11, 6, e0158305, 2016 [DOI]

  • A. Reppas, G. Lolas, A. Deutsch, H. Hatzikirou
    The extrinsic noise effect on lateral inhibition differentiation waves
    Transactions on Modeling and Computer Simulation, 26, 3, 19, 2016 [DOI]

  • F. Rost, A. R. Albors, V. Mazurov, L. Brusch, A. Deutsch, E. M. Tanaka, O. Chara
    Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls
    eLife, 5, e20357, 2016 [DOI]

  • R. Shrivastava, C. Malik, S. Ghosh
    Open channel current noise analysis of S6 peptides from KvAP channel on bilayer lipid membrane shows bimodal power law scaling
    Physica A: Statistical Mechanics and its Applications, 451, 533-540, 2016 [DOI]

  • V. Vitali, M. Sutka, G. Amodeo, O. Chara, M. Ozu
    The Water to Solute Permeability Ratio Governs the Osmotic Volume Dynamics in Beetroot Vacuoles
    Front Plant Sci, 7, 1388, 2016 [DOI]

  • J. C. L. Alfonso, M. A. Herrero, L. Nùñez
    A dose-volume histogram based decision-support system for dosimetric comparison of radiotherapy treatment plans
    Radiation Oncology, 10, 1, 1-9, 2015 [DOI]

  • K. Böttger, H. Hatzikirou, A. Voss-Böhme, E. A. Cavalcanti-Adam, M. A. Herrero, A. Deutsch
    An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence
    PLoS Comput Biol, 11, 9, e1004366, 2015 [DOI]

  • T. Buder, A. Deutsch, B. Klink, A. Voss-Böhme
    Model-Based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma
    PLoS Comput Biol, 11, 12, e1004662, 2015 [DOI]

  • DI. Cattoni, O. Chara, SB. Kaufman, FL. Gonzalez-Flecha
    Cooperativity in binding processes: New insights from phenomenological modeling
    PLoS ONE, 10(12), e0146043, 2015 [DOI]

  • O. Chara, L. Brusch
    Mathematical modelling of fluid transport and its regulation at multiple scales
    BioSystems, 130, 1-10, 2015 [DOI]

  • A. Deutsch
    Cellular automaton models for collective cell behaviour
    Lecture Notes in Computer Science, 9099, 1-10, 2015 [DOI]

  • L. Foret, L. Brusch, F. Jülicher
    Theory of cargo and membrane trafficking. In Stahl and Bradshaw (Eds.)
    Encyclopedia of Cell Biology, Elsevier, Vol.4: Systems Cell Biology, 56-62, 2015 [DOI]

  • C. Günther, B. Kind, MA. Reijn, N. Berndt, M. Martinez-Bueno, C. Wolf, V. Tüngler, O. Chara, YA. Lee, N. Hübner, L. Bicknell, S. Blum, C. Krug, F. Schmidt, S. Kretschmer, S. Koss, KR. Astell, G. Ramantani, A. Bauerfeind, DL. Morris, DS. Cunninghame Graham, D. Bubeck, A. Leitch, SH. Ralston, EA. Blackburn, M. Gahr, T. Witte, TJ. Vyse, I. Melchers, E. Mangold, MM. Nöthen, M. Aringer, A. Kuhn, K. Lüthke, L. Unger, A. Bley, A. Lorenzi, JD. Isaacs, D. Alexopoulou, K. Conrad, A. Dahl, A. Roers, ME. Alarcon-Riquelme, AP. Jackson, MA. Lee-Kirsch
    Defective removal of ribonucleotides from DNA promotes systemic autoimmunity
    J Clin Invest, 125(1), 413-24, 2015 [DOI]

  • H. Hatzikirou, J. C. L. Alfonso, S. Mühle, C. Stern, S. Weiss, M. Meyer-Hermann
    Cancer therapeutic potential of combinatorial immuno- and vasomodulatory interventions
    Journal of The Royal Society Interface, 12, 1112, 2015 [DOI]

  • H. Hatzikirou, K. Böttger, A. Deutsch
    Model-based comparison of cell density-dependent cell migration strategies
    Mathematical Modelling Natural Phenomena, 10, 1, 94-107, 2015 [DOI]

  • M. Herberg, T. Zerjatke, W. de Back, I. Glauche, I. Roeder
    Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies
    Cytometry, Part A, 87, 481–490, 2015 [DOI]

  • C. Mente, A. Voss-Böhme, A. Deutsch
    Analysis of Individual Cell Trajectories in Lattice-Gas Cellular Automaton Models for Migrating Cell Populations
    Bulletin of Mathematical Biology, 77, 4, 1-38, 2015 [DOI]

  • A. Rodrigo Albors, A. Tazaki, F. Rost, S. Nowoshilow, O. Chara, E. Tanaka
    Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration
    eLife, 4, e10230, 2015 [DOI]

  • M. Seifert, M. Garbe, B. Friedrich, M. Mittelbronn, B. Klink
    Comparative Transcriptomics Reveals Similarities and Differences between Astrocytoma Grades
    BMC Cancer, 15, 1, 1-22, 2015 [DOI]

  • T. El Khassawna, W. Böcker, K. Brodsky, D. Weisweiler, P. Govindarajan, M. Kampschulte, U. Thormann, A. Henss, M. Rohnke, N. Bauer, R. Müller, A. Deutsch, A. Ignatius, L. Dürselen, A. Langheinrich, K. S. Lips, R. Schnettler, C. Heiss
    Impaired extracellular matrix structure resulting from malnutrition in ovariectomized mature rats
    Histochemistry and Cell Biology, 144, 2015 [DOI]

  • C. Vincent, F. Rost, W. Masselink, L. Brusch, E. Tanaka
    Cellular dynamics underlying regeneration of appropriate segment number during axolotl tail regeneration
    BMC Developmental Biology, 15, 1, 48, 2015 [DOI]

  • S. Weitz, A. Deutsch, F. Peruani
    Self-propelled rods exhibit a novel phase-separated state characterized by the presence of active stresses and the ejection of polar clusters.
    Physical Review E, 92, 1, 012322, 2015 [DOI]

  • S. Aland, C. Landsberg, R. Müller, F. Stenger, M. Bobeth, A. C. Langheinrich, A. Voigt
    Adaptive diffuse domain approach for calculating mechanically induced deformation of trabecular bone
    Comp. Meth. in Biomech. and Biomed. Eng., 17, 1, 31-38, 2014 [DOI]

  • M. V. Blanco, D. I. Cattoni, P. Carriquiriborde, J. R. Grigera, O. Chara
    Kinetics of bioaccumulation of heavy metals in Odontesthes bonariensis is explained by a single and common mechanism
    Ecol. Mod., 274, 50-58, 2014 [DOI]

  • K. Bohl, S. Hummert, S. Werner, D. Basanta, A. Deutsch, S. Schuster, G. Theißen, A. Schroeter
    Evolutionary game theory: molecules as players
    Mol. BioSyst., 10, 3066-3074, 2014 [DOI]

  • O. Chara, E. M. Tanaka, L. Brusch
    Mathematical modeling of regenerative processes
    Curr. Top. Dev. Biol., 108, 283-317, 2014 [DOI]

  • N. Hohmann, W. Weiwei, U. Dahmen, O. Dirsch, A. Deutsch, A. Voß-Böhme
    How Does a Single Cell Know When the Liver Has Reached Its Correct Size?
    PLoS ONE, 9, 4, e93207, 2014 [DOI]

  • S. Hummert, K. Bohl, D. Basanta, A. Deutsch, S. Werner, G. Theißen, A. Schroeter, S. Schuster
    Evolutionary game theory: cells as players
    Mol. BioSyst., 10, 3044-3065, 2014 [DOI]

  • R. Müller, M. Kampschulte, T. El Khassawna, G. Schlewitz, B. Hürter, W. Böcker, M. Bobeth, A. C. Langheinrich, C. Heiss, A. Deutsch, G. Cuniberti
    Change of mechanical vertebrae properties due to progressive osteoporosis: combined biomechanical and finite-element analysis within a rat model
    Med. Biol. Eng. Comput., 52, 4, 405-414, 2014 [DOI]

  • F. Rost, C. Eugster, C. Schröter, A.C. Oates, L. Brusch
    Chevron formation of the zebrafish muscle segments
    J. Exp. Biol., 217, 21, 3870-3882, 2014 [DOI]

  • E. Schröck, K. Abou-El-Ardat, R. Wiedemuth, M. Seifert, A. Köhn-Luque, M. Ingargiola, K. Stirnnagel, A. Krüger, W. Nagel, K. Geiger, A. Beyer, L.A. Kunz-Schughart, G. Schackert, A. Temme, B. Klink, A. Deutsch
    GlioMath-DD: A multidisciplinary approach to study glioma evolution and identify targets for individualized therapies
    Proceedings of the 105th Annual Meeting of the AACR, Cancer Research, 74, 19 Supplement, Abstract nr 5341, 2014 [DOI]

  • M. Seifert, K. Abou-El-Ardat, B. Friedrich, B. Klink, A. Deutsch
    Autoregressive Higher-Order Hidden Markov Models: Exploiting Local Chromosomal Dependencies in the Analysis of Tumor Expression Profiles
    PLoS ONE, 9, 6, e100295, 2014 [DOI]

  • J. Starruß, W. de Back, L. Brusch, A. Deutsch
    Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology
    Bioinformatics, 30, 1331-1332, 2014 [DOI]

  • S. Weitz, S. Blanco, R. Fournier, J. Gautrais, C. Jost, G. Theraulaz
    Residence times and boundary-following behavior in animals
    Phys. Rev. E, 89, 5, 052715, 2014 [DOI]

  • O. Wolkenhauer, C. Auffray, O. Brass, J. Clairambault, A. Deutsch, D. Drasdo, F. Gervasio, L. Preziosi, P. Maini, A. Marciniak-Czochra, C. Kossow, L. Kuepfer, K. Rateitschak, I. Ramis-Conde, B. Ribba, A. Schuppert, R. Smallwood, G. Stamatakos, F. Winter, H. Byrne
    Enabling multiscale modeling in systems medicine
    Genome Medicine 6, 3, 2014 [DOI]

  • K. Zhuravleva, R. Müller, L. Schultz, J. Eckert, M. Bobeth, G. Cuniberti
    Determination of the Young’s modulus of porous ß-type Ti–40Nb by finite element analysis
    J. Mat. Des. 64, 1-8, 2014 [DOI]

  • O. M. Aliyu, M. Seifert, J. M. Corral, J. Fuchs, T. F. Sharbel,
    Copy number variation in transcriptionally active regions of sexual and apomictic Boechera demonstrates independently-derived apomictic lineages
    Plant Cell, 25, 10, 3808-3823, 2013 [DOI]

  • C. Bérard, M. Seifert, T. Mary-Huard, M.-L. Martin-Magniette,
    MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
    BMC Bioinformatics, 9, 271, 2013 [DOI]

  • U. Biswas, C. Blei, J. Lange, E. Christodoulou, M. Seifert, A. Beyer, R. Jessberger
    Meiotic cohesin SMC1β provides prophase I centromeric cohesion and is required for multiple synapsis-associated functions
    PLoS Genet., 9, 12, 2013 [DOI]

  • M.I. Brusca, R.M. Irastorza, D.I. Cattoni, M. Ozu, O. Chara
    Mechanisms of interaction between Candida albicans and Streptococcus mutans: An experimental and mathematical modelling study
    Acta Odontol. Scand., 71, 3-4, 416-423, 2013 [DOI]

  • D.I. Cattoni, O. Chara, C. Godefroy, E. Margeat, S. Trigueros, P.E. Milhiet , M. Nöllmann
    SpoIIIE mechanism of directional translocation involves target search coupled to sequence-dependent motor stimulation
    EMBO Rep., 14, 5, 473-479, 2013 [DOI]

  • W. de Back, R. Zimm, L. Brusch
    Transdifferentiation of pancreatic cells by loss of contact-mediated signaling
    BMC Syst. Biol., 7, 77, 2013 [DOI]

  • N. Hohmann, A. Voss-Böhme
    The epidemiological consequences of leprosy-tuberculosis co-infection
    Math. Biosci., 241, 2, 225-237, 2013 [DOI]

  • H. Luksch, M.J. Romanowski,O. Chara, V. Tüngler, E.R. Caffarena, M.C. Heymann,
    P. Lohse, I. Aksentijevich, E.F. Remmers, S. Flecks, N. Quoos, J. Gramatté, C. Petzold,
    S.R. Hofmann,S. Winkler, F. Pessler, T. Kallinich, G. Ganser, A. Nimtz-Talaska, U. Baumann,
    V. Runde, B. Grimbacher, J. Birmelin, M. Gahr, J. Roesler, A. Rösen-Wolff

    Naturally occurring genetic variants of human caspase-1 differ considerably in structure
    and the ability to activate interleukin-1β

    Hum. Mutat., 34, 1, 122-131, 2013 [DOI]

  • A. Köhn-Luque, W. de Back, Y. Yamaguchi, K. Yoshimura, M. A. Herrero and T. Miura.
    Dynamics of VEGF matrix-retention in vascular network patterning.
    Phys. Biol., 10, 6, 066007, 2013 [DOI]

  • A.P. Kupinski, I. Raabe, M. Michel, D. Ail, L. Brusch, T. Weidemann, C. Bökel
    Phosphorylation of the Smo tail is controlled by membrane localization and is dispensable for clustering
    J. Cell Sci., 126, 20, 4684-4697, 2013 [DOI]

  • M. Ozu, H.A. Alvarez, A.N. McCarthy, J.R. Grigera, O. Chara
    Molecular dynamics of water in the neighborhood of aquaporins
    Eur. Biophys. J. , 42, 4, 223-239, 2013 [DOI]

  • K. Roensch, A. Tazaki, O. Chara, E.M. Tanaka
    Progressive specification rather than intercalation of segments during limb regeneration
    Science , 342, 6164, 1375-9, 2013 [DOI]

  • V. Tüngler, W. Staroske, B. Kind, M. Dobrick, S. Kretschmer, F. Schmidt, C. Krug, M. Lorenz,
    O. Chara, P. Schwille, M.A. Lee-Kirsch

    Single-stranded nucleic acids promote SAMHD1 complex formation
    J. Mol. Med. (Berl), 91, 6, 759-770, 2013 [DOI]

  • A. Voss-Böhme, W. de Back, J. Starruß
    Cellular Potts Model
    In: Dubitzky et al. (eds.), Encyclopedia of Systems Biology, Springer, 2013
    [Encyclopedia of Systems Biology]

  • A. Voss-Böhme, A. Deutsch
    Interacting Cell Systems
    In: Dubitzky et al. (eds.), Encyclopedia of Systems Biology, Springer, 2013
    [Encyclopedia of Systems Biology]

  • K. Alleva, O. Chara, G. Amodeo
    Aquaporins: Another piece in the osmotic puzzle
    FEBS Lett., 586, 19, 2991-2999, 2012 [DOI]

  • K. Böttger, H. Hatzikirou, A. Chauviere, A. Deutsch
    Investigation of the migration/proliferation dichotomy and its impact on avascular glioma invasion
    Math. Model. Nat. Phenom., 7, 1, 105-135, 2012 [DOI]

  • W. de Back, J.X. Zhou, L. Brusch
    On the role of lateral stabilization during early patterning in the pancreas
    J. R. Soc. Interface, 10, 20120766, 2012 [DOI]

  • A. Deutsch, G. Theraulaz, T. Vicsek
    Collective motion in biological systems
    Interface Focus, 2, 6, 689-692, 2012 [DOI]

  • C.G. Ferrara, O. Chara, J.R. Grigera
    Aggregation of non-polar solutes in water at different pressures and temperatures:
    The role of hydrophobic interaction

    J. Chem. Phys., 137, 13, 135104, 2012 [DOI]

  • L. Foret, J.E. Dawson, R. Villaseñor, C. Collinet, A. Deutsch, L. Brusch, M. Zerial, Y. Kalaidzidis,
    F. Jülicher

    A general theoretical framework to infer endosomal network dynamics from quantitative
    image analysis

    Curr. Biol., 22, 15, 1381 - 1390, 2012 [DOI]

  • H. Hatzikirou, D. Basanta, M. Simon, K. Schaller, A. Deutsch
    ‘Go or Grow’: the key to the emergence of invasion in tumour progression?
    Math. Med. Biol., 29, 1, 49-65, 2012 [DOI]

  • C. Mente, I. Prade, L. Brusch, G. Breier, A. Deutsch
    A lattice-gas cellular automaton model for in vitro sprouting angiogenesis
    Acta Phys. Pol. B, 5, 1, 99-115, 2012 [DOI]

  • F. Peruani, J. Starruss, V. Jakovljevic, L. Sogaard-Andersen, A. Deutsch, M. Bär
    Collective motion and nonequilibrium cluster formation in colonies of gliding bacteria
    Phys. Rev. Lett., 108, 9, 098102, 2012 [DOI]

  • F. Rost, A. Quintero, M. Myllykoski, A. Igolkina, A. Rohde O’Sullivan Freltoft, N. Dixit
    Morphogenesis and dynamics of multicellular systems
    ECMI Newsletter 52, 2012

  • J. Starruss, F. Peruani, V. Jakovljevic, L. Soogard-Andersen, A. Deutsch, M. Bär
    Pattern-formation mechanisms in motility mutants of Myxococcus xanthus
    Interface Focus, 2, 6, 774-785, 2012 [DOI]

  • A. Voß-Böhme
    Multi-scale modeling in morphogenesis: a critical analysis of the cellular potts model
    PLoS ONE, 7, 9, e42852, 2012 [DOI]

  • D. Basanta, B. Ribba, E. Watkin, B. You, A. Deutsch
    Computational analysis of the influence of microenvironment on carcinogenesis
    Math. Biosci., 229, 1, 22-29, 2011 [DOI]

  • D.I. Cattoni, C. Ravazzola, V. Tüngler, D.E. Wainstein, O. Chara
    Effect of intestinal pressure on fistula closure during vacuum assisted treatment: a computational approach
    Int J Surg., 9, 8, 662-668, 2011 [DOI]

  • O. Chara, M.V. Espelt, G. Krumschnabel, P.J. Schwarzbaum
    Regulatory volume decrease and P receptor signaling in fish cells: mechanisms, physiology, and modeling approaches
    J. Exp. Zool. A Ecol. Genet. Physiol., 315A, 175-202, 2011 [DOI]

  • O. Chara, A.N. McCarthy, J.R. Grigera
    Crossover between tetrahedral and hexagonal structures in liquid water
    Phys. Lett. A., 375, 572-576, 2011 [DOI]

  • S. de Franciscis, H. Hatzikirou, A. Deutsch
    Analysis of lattice-gas cellular automaton models for tumor growth by means of fractal scaling
    Acta Phys. Pol. B. Proc. Suppl., 4, 2, 167, 2011 [DOI]

  • D. Evans, W. de Back
    Evolutionary Robotics
    In: S. Craig Roberts (ed.), Applied Evolutionary Psychology, Oxford University Press, 2011
    [Oxford University Press]

  • A. Köhn-Luque, W. de Back, J. Starruß, A. Mattioti, A. Deutsch, J-M. Pérez-Pomares, M.A. Herrero
    Early embryonic vascular patterning by matrix-mediated paracrine signalling: a mathematical model study
    PLoS One, 6, 9, e24175, 2011 [DOI]

  • M. Kuecken, B. Rinkevich, L. Shaish, A. Deutsch
    Nutritional resources as positional information for morphogenesis in the stony coral stylophora pistillata
    J. Theor. Biol., 275, 1, 70 - 77, 2011 [DOI]

  • C. Landsberg, F. Stenger, A. Deutsch, M. Gelinsky, A. Rösen-Wolff, A. Voigt
    Chemotaxis of mesenchymal stem cells within 3D biomimetic scaffolds--a modeling approach
    J. Biomech., 44, 2, 359 - 364, 2011 [DOI]

  • R. Osinga, M. Schutter, T. Wijgerde, B. Rinkevich, S. Shafir, M. Shpigel, G. M. Luna, R. Danovaro, L. Bongiorni, A. Deutsch, M. Kuecken, B. Hiddinga, M. Janse, A. McLeod, C. Gili, S. Lavorano, S. Henard, D. Barthelemy, G. Westhoff, E. Santos, A. Weissenbacher, M. Kuba, R. Jones, R. Leewis, D. Petersen, M. Laterveer
    The CORALZOO project: a synopsis of four years of public aquarium science
    JMBA, 1-16, 2011 [DOI]

  • F. Peruani, T. Klauss, A. Deutsch, A. Voss-Böhme
    Traffic jams, gliders and bands in the quest for collective motion of self-propelled particles
    Phys. Rev. Lett., 106, 12, 128101, 2011 [DOI]

  • T. O. Roth, A. Deutsch
    Universal synthesizer and window: Cellular automata as a new kind of cybernetic images
    In: O. Grau (ed.), Imagery in the 21st century, MIT Press, 2011
    [MIT Press]

  • M. Tektonidis, H. Hatzikirou, A. Chauviere, M. Simon, K. Schaller, A. Deutsch
    Identification of intrinsic mechanisms for glioma invasion
    J. Theor. Biol., 287, 131-147, [DOI]

  • A. Voss-Böhme
    On the core property of the cylinder functions class in the construction of interacting particle systems
    Kybernetica, 47, 6, 944-957, [DOI]

  • A. Voss-Böhme, W. Schenk, A.-K. Köllner
    On the duality relation between interacting particle systems and Markov chains
    Markov Proc. Rel. Fields, 17, 3, 315-346, 2011

  • D.E. Wainstein, V. Tüngler, C. Ravazzola, O. Chara
    Management of external small bowel fistulae: Challenges and controversies confronting the general surgeon
    Int. J. Surg., 9, 3, 198-203, 2011 [DOI]

  • T. Walther, H. Reinsch, P. Weber, K. Ostermann, A. Deutsch & T. Bley
    Applying dimorphic yeasts as model organisms to study mycelial growth: Part 1. Experimental investigation of the spatio-temporal development of filamentous yeast colonies.
    Bioprocess. Biosyst. Eng., 34, 1, 13-20, 2011 [DOI]

  • T. Walther, H. Reinsch, K. Ostermann, A. Deutsch, T. Bley
    Applying dimorphic yeasts as model organisms to study mycelial growth: part 2. Use of mathematical simulations to identify different construction principles in yeast colonies
    Bioprocess. Biosyst. Eng., 34, 21-31, 2011 [DOI]

  • J.X. Zhou, L. Brusch, S. Huang
    Predicting pancreas cell fate decisions and reprogramming with a hierarchical multi-attractor model
    PLoS ONE 6, 3, e14752, 2011 [DOI]

  • W. Alt, H. Byrne & A. Deutsch
    From cells to organisms: current topics in mathematical and theoretical biology
    Acta Biotheor., 58, 4, 307-313, 2010 [DOI]

  • B. Chopard, R. Ouared, A. Deutsch, H. Hatzikirou & D. Wolf-Gladrow
    Lattice-gas cellular automaton models for biology: From fluids to cells
    Acta Biotheor., 58, 4, 329-340, 2010 [DOI]

  • M. Choudhury, N. Ganguly, A. Maiti, A. Mukherjee, L. Brusch, A. Deutsch, F. Peruani
    Modeling discrete combinatorial systems as alphabetic bipartite networks: Theory and applications
    Phys. Rev. E, 81, 036103, 2010 [DOI]

  • E. Gin, E. M. Tanaka, L. Brusch
    A model for cyst lumen expansion and size regulation via fluid secretion
    J. Theor. Biol., 264, 1077-1088, 2010 [DOI]

  • H. Hatzikirou, A. Deutsch
    Lattice-gas cellular automaton modeling of emergent behavior in interacting cell populations
    In: Simulating complex systems by cellular automata 301-331, 2010 [DOI]

  • H. Hatzikirou, D. Basanta, M. Simon, K. Schaller, A. Deutsch
    'Go or Grow': the key to the emergence of invasion in tumour progression?
    Math. Med. Biol., 29, 1, 49-65, 2010 [DOI]

  • H. Hatzikirou, L. Brusch, C. Schaller, M. Simon, A. Deutsch
    Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion
    Comput. Math. Appl., 59, 2326-2339, 2010 [DOI]

  • H. Hatzikirou, L. Brusch, A. Deutsch
    From cellular automaton rules to an effective macroscopic mean-field description
    Acta Phys. Pol. B Proc. Suppl., 3, 399-416, 2010 [PDF]

  • C. Mente, I. Prade, L. Brusch, G. Breier & A. Deutsch
    Parameter estimation with a novel gradient-based optimization method for biological lattice-gas cellular automaton models
    J. Math. Biol., 63, 1, 173-200, 2010 [DOI]

  • T. Nakakuki, M. R. Birtwistle, Y. Saeki, N. Yumoto, K. Ide, T. Nagashima, L. Brusch, B. A. Ogunnaike, M. Okada-Hatakeyama, B. N. Kholodenko
    Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics
    Cell, 141, 884-896, 2010 [DOI]

  • S. Nandi, L. Brusch, A. Deutsch, N. Ganguly
    Coverage-maximization in networks under resource constraints
    Phys. Rev. E, 81, 061124, 2010 [DOI]

  • A. Voß-Böhme, A. Deutsch
    The cellular basis of cell sorting kinetics
    J. Theor. Biol., 263, 419-436, 2010 [DOI]

  • W. Alt, L. Preziosi, A. Deutsch
    Computational cell biology
    In: J. Math. Biol., special issue
    Springer, 2009 [DOI]

  • M. Dellnitz, G. Froyland, C. Horenkamp, K. Padberg-Gehle
    On the approximation of transport phenomena - a dynamical systems approach
    In: GAMM Mitteilungen 32
    Wiley-VCH, 47-60, 2009

  • H. Hatzikirou, G. Breier, A. Deutsch
    Cellular automaton models for tumor invasion
    In: Encyclopedia of complexity and systems science
    Springer, 2009

  • D. Helbing, A. Deutsch, S. Diez, K. Peters, Y. Kalaidzidis, K. Padberg-Gehle, S. Lämmer, A. Johansson, G. Breier, F. Schulze, M. Zerial
    Biologistics and the struggle for efficiency: concepts and perspectives
    Advances in Complex Systems, 12, 533-548, 2009 [DOI]

  • K. Padberg-Gehle, B. Thiere, R. Preis, M. Dellnitz
    Local expansion concepts for detecting transport barriers in dynamical systems
    In: Communications in Nonlinear Science and Numerical Simulations / 14 (12)
    ScienceDirect, Elsevier, 4176-4190, 2009

  • I. Pieper, K. Wechler, M. Katzberg, L. Brusch, P. G. Sørensen, F. Mensonides, M. Bertau
    Biosimulation of drug metabolism--A yeast based model
    European Journal of Pharmaceutical Sciences, 36, 157-170, 2009 [DOI]

  • W. Alt, A. Deutsch, L. Preziosi
    Computational cell biology: second theme issue on “computational biology"
    J. Math. Biol., 58, 1-5, 2008

  • D. Basanta, A. Deutsch, H. Hatzikirou, M. Simon
    Evolutionary game theory elucidates the role of glycolysis in glioma progression and invasion
    Cell Prolif., 41, 980, 2008 [DOI]

  • D. Basanta, A. Deutsch
    A game theoretical perspective on the somatic evolution of cancer
    In: Selected topics on cancer modelling: genesis, immune competition, therapy
    Birkhäuser, Boston, 2008 [DOI]

  • D. Basanta, H. Hatzikirou, A. Deutsch
    Studying the emergence of invasiveness in tumours using game theory
    Europ. Phys. J., 63, 393-397, 2008 [DOI]

  • L. Brusch, P. del Conte-Zerial, Y. Kalaidzidis, J. Rink, B. Habermann, M. Zerial, A. Deutsch
    Protein domains of GTPases on membranes: do they rely on Turing's mechanism?
    In: Mathematical Modeling of Biological Systems, Volume I.
    Birkhauser, Boston, 33-46, 2008 [DOI]

  • L. Brusch, A. Deutsch
    The coherence of the vesicle theory of protein secretion
    J. Theor. Biol., 252, 370-373, 2008 [DOI]

  • P. del Conte-Zerial, L. Brusch, J. Rink, C. Collinet, Y. Kalaidzidis, M. Zerial, A. Deutsch
    Membrane identity and GTPase cascades regulated by toggle and cut-out switches
    Mol. Syst. Biol., 4, 206, 2008 [DOI]

  • T. Das, S. Nandi, A. Deutsch, N. Ganguly
    Bio-inspired Search and Distributed Memory Formation on Power-Law Networks
    In: Parallel Problem Solving from Nature - PPSN X
    Springer, 5199, 154-164, 2008

  • H. Hatzikirou, A. Deutsch
    Cellular automata as microscopic models of cell migration in heterogeneous environments
    Curr. Top. Dev. Biol., 401-434, 2008 [DOI]

  • M. Kücken, J. Soriano, P. A. Pullarkat, A. Ott, E. M. Nicola
    An osmoregulatory basis for shape oscillations in regenerating Hydra
    Biophys J, 95, 978-985, 2008 [DOI]

  • B. Mitra, N. Ganguly, S. Ghose, F. Peruani
    Stability Analysis of Peer-to-Peer Networks Against Churn
    Pramana - J. Phys., 71, 2008

  • S. Nandi, L. Brusch, A. Pal, N. Ganguly
    Coverage Maximization in Small World Network Under Bandwidth Constraint
    In: SIGCOMM 2008 Conference on Applications, Technologies, Architectures, and Protocols for Computer Communications
    ACM, 481-482, 2008

  • F. Peruani, G. J. Sibona
    Dynamics and Steady States in Excitable Mobile Agent Systems
    Physical Review Letters, 100, 168103, 2008 [DOI]

  • F. Peruani, M. Bär, A. Deutsch
    A mean-field theory for self-propelled particles interacting by velocity alignment mechanisms
    Eur. Phys. J., 157, 2008 [DOI]

  • J. Starruß, F. Peruani, M. Bär, A. Deutsch
    Bacterial swarming driven by rod shape
    In: Mathematical Modeling of Biological Systems, Volume I: Cellular Biophysics, Regulatory Networks, Development, Biomedicine, and Data Analysis
    Birkhauser, 2008 [DOI]

  • M. Bertau, J. Smolinski, L. Brusch, U. Kummer, F. Mensonides
    Biosimulation in Drug Development
    Wiley-VCH, Weinheim, 37-64, 2007

  • A. Deutsch
    Lattice-gas cellular automaton modelling of morphogenetic motion in developing cell systems
    In: Single Cell Based Models in Biology and Medicine
    Birkhauser, Basel, 2007

  • S. Kulkarni, N. Ganguly, G. Canright, A. Deutsch
    A bio-inspired algorithm for location search in peer to peer network "Advances in biologically inspired information systems: models, methods, and tools"
    In: Springer series in Computational Intelligence

  • J. Starruß, T. Bley, L. Søgaard-Andersen, A. Deutsch
    A new mechanism for collective migration in M. xanthus
    J. Stat. Phys., 128, 269-286, 2007 [DOI]

  • O. Babaoglu, G. Canright, A. Deutsch, G. A. Di Caro, F. Ducatelle, L. M. Gambardella, N. Ganguly, M. Jelasity, R. Montemanni, A. Montresor, T. Urnes
    Design patterns from biology for distributed computing
    ACM Trans. Auton. Adapt. Syst., 1, 26-66, 2006 [DOI]

  • A. Bianchi, I. Pakarinen, J. Bajars, P. P. Caro, P. Grydgaard, J. Parrott, L. Brusch
    Ethanol production with micro-organisms. Process control and modelling
    In: Proceedings of the 18th ECMI modelling week
    Lappeenrannan teknillinen yliopisto, Lappeenranta, 9-23, 2006

  • U. Börner, A. Deutsch, M. Bär
    A generalized discrete model linking rippling pattern formation and individual cell reversal statistics in colonies of myxobacteria
    Phys. Biol., 3, 138-146, 2006 [DOI]

  • G. Canright, A. Deutsch, T. Urnes
    Chemotaxis-inspired load balancing
    Complexus, 3, 8-23, 2006 [DOI]

  • A. Deutsch
    Modelling cooperative phenomena in interacting cell systems with cellular automata
    In: BIOMAT 2005: Proceedings of the International Symposium on Mathematical and Computational Biology Rio de Janeiro, Brazil 3 - 8 December 2005
    World Scientific, Singapore, 2006

  • H. Hatzikirou, L. Brusch, A. Deutsch, C. Schaller, M. Simon
    Characterization of Travelling Front Behaviour in a Lattice Gas Cellular Automaton Model of Glioma Invasion
    Math. Mod. Meth. Appl. Sci., 15, 1779-1794, 2006 [DOI]

  • S. Hayat, K. Ostermann, L. Brusch, W. Pompe, G. Rödel
    Towards in vivo computing: Quatitative analysis of an artificial gene regulatory network behaving as a RS flip-flop and simulating the system in silico
    In: Bio-Inspired Models of Network, Information and Computing Systems
    IEEE, 1-7, 2006 [DOI]

  • F. Peruani, A. Deutsch, M. Bär
    Non-equilibrium clustering of self-propelled rods
    Phys. Rev. E, 74, 030904, 2006

  • T. Pompe, J. Starruß, M. Bobeth, W. Pompe
    Modeling of pattern development during fibronectin nanofibril formation
    Biointerphases, 1, 93-97, 2006 [DOI]

  • L. Arlotti, A. Deutsch, M. Lachowicz
    On a discrete Boltzmann-type model of swarming
    Math. Comp. Model., 41, 1193-1201, 2005 [DOI]

  • T. Beyer, G. Schaller, A. Deutsch, M. Meyer-Hermann
    Parallel dynamic and kinetic regular triangulation in three dimensions
    Comput. Phys. Commun., 172, 86-108, 2005 [DOI]

  • L. Brusch, H. K. Park, M. Bär, A. Torcini
    Spiral instabilities in periodically forced extended oscillatory media
    In: EQUADIFF 2003-International Conference on Differential equations
    World Scientific, Singapore, 777-782, 2005 [DOI]

  • M. Fritsch, J. Starruß, A. Lösche, S. Müller, T. Bley
    Cell cycle synchronization of Cupriavidus necator by continuous phasing measured via flow cytometry
    Biotechnol. Bioeng., 92, 635-642, 2005

  • N. Ganguly, L. Brusch, A. Deutsch
    Design and analysis of a bio-inspired search algorithm for peer-to-peer networks
    In: Self-Star Properties in Complex Information Systems
    Springer-Verlag, Heidelberg, 3460, 2005 [DOI]

  • H. Hatzikirou, A. Deutsch, C. Schaller, M. Simon, K. Swanson
    Mathematical modelling of glioblastoma development: a review
    Math. Mod. Meth. Appl. Sci., 15, 1779-1794, 2005 [DOI]

  • H. Hatzikirou, A. Deutsch, C. Schaller, M. Simon
    Mathematical Modelling of Glioblastoma Tumor Development: a Review
    Math Mod Meth Appl S, 15, 1779-1794, 2005

  • T. Walther, S. Reinsch, K. Ostermann, A. Deutsch, T. Bley
    Coordinated development of yeast colonies. A) Experimental analysis of the adaptation to different nutrient concentrations
    Eng. Life Sci., 5, 115-124, 2005 [DOI]

  • T. Walther, S. Reinsch, K. Ostermann, A. Deutsch, T. Bley
    Coordinated development of yeast colonies. B) Quantitative modeling of diffusion-limited growth
    Eng. Life Sci., 5, 125-133, 2005 [DOI]

  • M. Wurzel, C. Schaller, M. Simon, A. Deutsch
    Cancer cell invasion of brain tissue: guided by a prepattern?
    J. Theor. Medic., 6, 21-31, 2005 [DOI]

  • M. Wurzel, K. L. Schaller, M. Simon, A. Deutsch
    Brain cancer invasion of brain tissue: guided by a prepattern
    J. Theor. Medic., 6, 21-31, 2005

  • L. Brusch, G. Cuniberti, M. Bertau
    Model evaluation for glycolytic oscillations in yeast biotransformations of xenobiotics
    Biophys. Chem., 109, 413-426, 2004 [DOI]

  • L. Brusch, E. M. Nicola, M. Bär, Y. Gong, D. J. Christini
    Comment on "Antispiral Waves in Reaction-Diffusion Systems" [3] (multiple letters)
    Phys. Rev. Lett., 92, 898011-898021, 2004 [DOI]

  • M. Bär, L. Brusch
    Breakup of spiral waves caused by radial dynamics: Eckhaus and finite wave number instabilities
    New J. Phys., 6, 5, 2004 [DOI]

  • M. Bär, L. Brusch, M. Or-Guil
    Mechanism for spiral wave breakup in excitable and oscillatory media.
    Phys. Rev. Lett., 92, 119801, 2004 [DOI]

  • U. Börner, A. Deutsch, M. Bär
    Pattern formation in an interacting cell system: rippling in myxobacterial aggregates
    In: Function and regulation of cellular systems: experiments and models
    Birkhauser, Basel, 2004

  • A. Deutsch
    Sporenmuster bei Schlauchpilzen
    In: Wenn Monster munter werden -- einfache Experimente aus der Biologie
    Wiley-VCH, Weinheim, 2004

  • A. Deutsch
    Mathematical and Theoretical Biology: a European Perspective
    Science Next Wave (online journal), 12 March, 2004

  • D. Drasdo, S. Höhme, S. Dormann, A. Deutsch
    Cell-based models of avascular tumor growth
    In: Function and regulation of cellular systems: experiments and models
    Birkhauser, Basel, 2004

  • N. Ganguly, G. Canright, A. Deutsch
    Design of a robust search algorithm for p2p networks
    In: Proceedings of the 11th International Conference on High Performance Computing
    Bangalore, India, 2004 [DOI]

  • N. Ganguly, A. Deutsch
    A cellular automata model for an immune based search algorithm
    In: Proceedings of the Sixth International Conference on Cellular Automata for Research and Industry (ACRI 2004)
    Springer, Amsterdam, Netherlands, 3305, 2004

  • N. Ganguly, G. Canright, A. Deutsch
    Design of an efficient search algorithm for p2p networks using concepts from natural immune systems
    In: Proceedings of the 8th International Conference on Parallel Problem Solving from Nature (PPSN VIII)
    Birmingham, UK, 2004 [DOI]

  • N. Ganguly, A. Deutsch
    Developing efficient search algorithms for p2p networks using proliferation and mutation
    In: Proceedings of the International Conference on Artificial Immune Systems
    Catania, Italy, 2004 [DOI]

  • W. Grygierzec, A. Deutsch, L. Philipsen, M. Friedenberger, W. Schubert
    Modelling tumour cell population dynamics based on molecular adhesion assumptions
    J. Biol. Sc., 12, 273-288, 2004

  • J. Moreira, A. Deutsch
    Pigment pattern formation in zebrafish during late larval stages: A model based on local interactions
    Developm. Dyn., 232, 33-42, 2004 [DOI]

  • E. Nicola, L. Brusch, M. Bär
    Antispiral waves as sources in oscillatory reaction-diffusion media
    J Phys Chem B, 108, 14733-14740, 2004 [DOI]

  • T. Walther, A. Grosse, K. Ostermann, A. Deutsch, T. Bley
    Mathematical modeling of regulatory mechanisms in yeast colony development
    J. Theor. Biol., 229, 327-338, 2004 [DOI]

  • L. Brusch, A. Torcini, M. Bär
    Doppler Effect of Nonlinear Waves and Superspirals in Oscillatory Media
    Phys Rev Lett, 91, 1083021-1083024, 2003 [DOI]

  • L. Brusch, A. Torcini, M. Bär
    Nonlinear analysis of the Eckhaus instability: Modulated amplitude waves and phase chaos with nonzero average phase gradient
    Phys D Nonlinear Phenom, 174, 152-167, 2003 [DOI]

  • L. Brusch
    Antispiral and superspiral waves
    Wiss. Z. TU Dresden, 52, 55-58, 2003

  • A. Czirók, A. Deutsch, M. Wurzel
    Individual-based models of cell flocking
    In: Polymer and cell dynamics: multicsale modeling and numerical simulations
    Birkhäuser, Basel, 2003

  • A. Deutsch
    Mathematical modelling and simulation of interacting cell systems with cellular automata
    In: Computational fluid and solid dynamics
    Elsevier, Amsterdam, 2003

  • U. Thiele, L. Brusch, M. Bestehorn, M. Bär
    Modelling thin-film dewetting on structured substrates and templates: Bifurcation analysis and numerical simulations
    Eur. Phys. J. E, 11, 255-271, 2003 [DOI]

  • L. Brusch, H. Kühne, U. Thiele, M. Bär
    Dewetting of thin films on heterogeneous substrates: Pinning versus coarsening
    Phys. Rev.~E, 66, 1-5, 2002 [DOI]

  • L. Brusch, W. Lorenz, M. Or-Guil, M. Bär, U. Kummer
    Fold-Hopf bursting in a model for calcium signal transduction
    Z. Phys. Chem., 216, 487-497, 2002 [DOI]

  • U. Börner, A. Deutsch, H. Reichenbach, M. Bär
    Rippling Patterns in Aggregates of Myxobacteria Arise from Cell-Cell Collisions
    Phys. Rev. Lett., 89, 078101, 2002 [DOI]

  • A. Deutsch
    Mathematical modelling and simulation of interacting cell systems with cellular automata
    J. Medic. Inform. Technol., 3, 3-6, 2002

  • A. Deutsch, S. Dormann
    Principles and mathematical modeling of biological pattern formation
    Mat. Stos., 3, 16-38, 2002

  • S. Dormann, A. Deutsch
    Modeling of self-organized avascular tumor growth with a hybrid cellular automaton
    In Silico Biol., 2, 393-406, 2002

  • J. Moreira, A. Deutsch
    Cellular automaton models of tumour development -- a critical review
    Adv. Compl Syst. (ACS), 5, 1-21, 2002

  • L. Brusch, A. Torcini, M. Van Hecke, M. G. Zimmermann, M. Bär
    Modulated amplitude waves and defect formation in the one-dimensional complex Ginzburg-Landau equation
    Phys D Nonlinear Phenom, 160, 127-148, 2001 [DOI]

  • A. Deutsch
    Modelling interacting cell systems in biology and medicine with cellular automata
    In: Proceedings of the German Conference on Bioinformatics
    Braunschweig, 2001

  • S. Dormann, A. Deutsch, A. T. Lawniczak
    Fourier analysis of Turing-like pattern formation in cellular automaton models
    Future Gener. Comp. Sys., 17, 901-909, 2001 [DOI]

  • M. Meyer-Hermann, A. Deutsch, M. Or-Guil
    Recycling probability and dynamical properties of germinal center reactions
    J. Theor. Biol., 210, 265-285, 2001 [DOI]

  • L. Brusch, M. G. Zimmermann, M. Van Hecke, M. Bär, A. Torcini
    Modulated amplitude waves and the transition from phase to defect chaos
    Phys Rev Lett, 85, 86-89, 2000 [DOI]

  • A. Deutsch
    A new mechanism of aggregation in a lattice-gas cellular automaton model
    Math. Comp. Mod., 31, 35-40, 2000 [DOI]

  • A. Deutsch, A. T. Lawniczak
    Probabilistic lattice models of collective motion and aggregation; from individual to collective dynamics
    Mathem. Biosc., 156, 255-269, 1999 [DOI]

  • A. Deutsch
    Principles of morphogenetic motion: swarming and aggregation viewed as self-organization phenomena
    J. Biosc., 24 (1), 115-120, 1999

  • G. Diener, L. Brusch
    A new simple version of the replica method
    J. Phys. A, 32, 585-593, 1999 [DOI]

  • G. Diener, L. Brusch
    Simplified replica treatment of various random-energy and random-field models with confinement potential
    Phys. Rev. E, 60, 3573-3579, 1999 [DOI]

  • H. J. Bussemaker, A. Deutsch, E. Geigant
    Mean-field analysis of a dynamical phase transition in a cellular automaton model for collective motion
    Phys. Rev. Lett., 78, 5018-5021, 1997 [DOI]

  • A. Mogilner, A. Deutsch, J. Cook
    Models for spatio-angular self-organization in cell biology
    In: Dynamics of cell and tissue motion
    Birkhäuser, Basel, 173-182, 1997

  • W. Alt, A. Deutsch, A. Kamphuis, J. Lenz
    Zur Entwicklung der theoretischen Biologie: Aspekte der Modellbildung und Mathematisierung
    Jahrb. Gesch. Theorie Biol., 3, 7-60, 1996

  • A. Deutsch
    Orientation-induced pattern formation: Swarm dynamics in a lattice-gas automaton model
    J. Bifurcat. Chaos, 6, 1735-1752, 1996 [DOI]

  • A. Deutsch
    Lattice-gas approach to collective transport phenomena in biological pattern formation
    In: Nonlinear Physics of Complex Systems -- Current Status and Future Trends
    Springer, New York, 1996 [DOI]

  • A. Deutsch
    Towards analyzing complex swarming patterns in biological systems with the help of lattice-gas cellular automata
    J. Biol. Syst., 3, 947-955, 1995 [DOI]

  • A. Deutsch
    Muster, Modelle, Simulationen - Neue Wege zum Verständnis von Strukturbildung in der Natur
    In: Muster des Lebendigen
    Vieweg, Wiesbaden, 1-38, 1994

  • A. Deutsch
    Das Sein bestimmt das Gestaltsein
    In: Muster des Lebendigen
    Vieweg, Wiesbaden, 91-108, 1994

  • A. Deutsch
    Introduction and Overview
    In: Oscillations and morphogenesis
    Marcel Dekker, New York, 1-23, 1993

  • A. Deutsch
    A Novel Cellular Automaton Approach to Pattern Formation by Filamentous Fungi
    In: Oscillations and Morphogenesis
    Marcel Dekker, Inc., 463-480, 1993

  • A. Deutsch
    Zelluläre Automaten als Modelle von Musterbildungsprozessen in biologischen Systemen
    In: Informatik in den Biowissenschaften
    Springer, Berlin, 181-192, 1993

  • A. Deutsch, A. Dress, L. Rensing
    Formation of morphological differentiation patterns in the ascomycete N eurospora crassa
    Mech. Develop., 44, 17-31, 1993

  • A. Deutsch
    A novel cellular automaton approach to pattern formation by filamentous fungi
    In: Oscillations and morphogenesis
    Marcel Dekker, New York, 463-480, 1993

  • A. Deutsch
    Sporenmusterbildung beim Schlauchpilz N eurospora crassa
    Biol. in uns. Zeit, 23, 259-264, 1993

  • L. Rensing, A. Deutsch
    Oscillations and morphogenesis -- introduction and overview
    In: Oscillations and morphogenesis
    Marcel Dekker, New York, 1-23, 1993

  • A. Deutsch
    Patterns of spore formation in N eurospora crassa and their simulation with a cellular automaton
    In: Nonlinear wave processes in excitable media
    Plenum, New York, 259-267, 1991

  • L. Rensing, A. Deutsch
    Ordnungsprinzipien periodischer Strukturen
    Biol. in uns. Zeit, 20, 314-321, 1990 [DOI]